Use of eDNA Analysis in the Conservation of Grassland Fungi
Researchers
Professor Gareth Wyn Griffith
Dr Andrew Detheridge
The Overview
Fungi are vital components of the world’s biodiversity, performing critical roles in nutrient cycling and delivering nutrients for plant growth. Surveying is essential for conservation, to understand where species exist, their functions, and to raise awareness of their importance.
Researchers at Aberystwyth University (AU) developed a novel DNA metabarcoding method using soil environmental DNA (eDNA), deployed for rapid assessment of fungal biodiversity in grassland habitats. The method has been used in commercial and legal contexts, providing evidence and enabling faster decision making. Examples include: the designation of a site in Birmingham as a Site of Special Scientific Interest (SSSI), decisions in planning applications, and sanctioning landowners who contravened land-use regulations.
Increased public understanding and participation was achieved through several citizen science projects by training citizen scientists in DNA barcoding, and TV programmes, films and apps raising awareness of fungal conservation.
The Research
The new DNA metabarcoding method provides species richness and abundance, and has been validated by comparison with ‘standard’ fruitbody (mushroom) surveys. In addition, the developed method can be conducted at any time of year and can deliver results within a matter of weeks.
Two strands of research have permitted this development. First, the use of DNA barcoding to define fungal species via DNA sequences (Internal Transcribed Spacer (ITS) and Large Sub-Unit (LSU) barcodes. Second, the advent of NextGen sequencing (NGS) methods led to the development of DNA metabarcoding. The relative abundance of sequences linked to particular species allows the relative abundance of each species to be assessed. For fungi which are not visible to the naked eye, this method transforms the assessment of fungal communities.
The Impact
Impact on Policy
Impact on the Environment and Conservation
Impact on Public Awareness of Grasslands Fungi
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Research Impact Case Studies | Research Theme: Environment